Transcription Factor
| Accessions: | UP00294A (UniPROBE 20160601) |
| Names: | Smp1, Transcription factor SMP1, YBR1245, YBR182C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P38128 |
| Description: | Putative transcription factor involved in regulating the response to osmotic stress; member of the MADS-box family of transcription factors |
| Length: | 108 |
| Pfam Domains: | 8-58 SRF-type transcription factor (DNA-binding and dimerisation domain) |
| Sequence: (in bold interface residues) | 1 GRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYSSVD 60 61 MSNLLNVHQNNTDLPHNIIEPSDYGDYVKKPRVVLNERKRRRRRATVL |
| Interface Residues: | 2, 3, 14, 17, 18, 22 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A |
| Binding Motifs: | UP00294A_1 tkacctwtAATTawaybwsmw |
| Binding Sites: | AAAATAGA AAATTAAT AATATATT AATTAATA AATTAATT ATAAATTA ATATATTA ATATTAAG ATTAATAA ATTAATTA CTAATATA TAAATTAA TAATATAA TAATATTA TAATTATA TAATTTAA TATATTAA TATTAATA TTAATAAA CCCACCCG |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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