DNA Binding Motif

						

			
Accessions: UP00012A_1 (UniPROBE 20160601)

			
Names: Bbx, bobby sox homolog (Drosophila), Hbp2, HMG box transcription factor BBX, HMG box-containing protein 2
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 15
Consensus: taaTTCAwTGAAswd
Weblogo: 
PSSM: P0      A      C      G      T
01   0.24   0.19   0.12   0.44      t
02   0.61   0.16   0.06   0.18      a
03   0.46   0.14   0.22   0.18      a
04   0.13   0.03   0.05   0.78      T
05   0.09   0.02   0.02   0.87      T
06   0.14   0.75   0.06   0.05      C
07   0.92   0.03   0.02   0.04      A
08   0.45   0.08   0.12   0.34      w
09   0.04   0.02   0.03   0.92      T
10   0.05   0.06   0.75   0.14      G
11   0.87   0.02   0.02   0.09      A
12   0.78   0.05   0.03   0.13      A
13   0.12   0.28   0.35   0.24      s
14   0.29   0.13   0.12   0.46      w
15   0.33   0.06   0.35   0.26      d
Binding TFs: UP00012A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AAATGAAC
AATGAATG
AATGAATT
AATTAATA
ATCAATTA
ATGAATGA
ATGAATGG
ATGAATTA
ATTCATTC
GAAATGAA
TAAATGAA
TCAATGAA
TCAATTGA
TCACTGAA
TCTTTTAA
TGAATGAA
TGTATTAA
TTAATAAA
TTAATTAA
TTCATGAA
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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