DNA Binding Motif
| Accessions: | UP00012A_2 (UniPROBE 20160601) |
| Names: | Bbx, bobby sox homolog (Drosophila), Hbp2, HMG box transcription factor BBX, HMG box-containing protein 2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | tvwybGTTAACaswkrr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.23 0.18 0.40 t 02 0.30 0.27 0.34 0.08 v 03 0.49 0.15 0.06 0.31 w 04 0.22 0.27 0.21 0.30 y 05 0.16 0.26 0.26 0.31 b 06 0.07 0.04 0.81 0.07 G 07 0.06 0.03 0.09 0.81 T 08 0.05 0.10 0.05 0.80 T 09 0.82 0.05 0.09 0.04 A 10 0.75 0.18 0.03 0.05 A 11 0.16 0.69 0.04 0.11 C 12 0.64 0.14 0.16 0.06 a 13 0.14 0.27 0.42 0.17 s 14 0.28 0.23 0.16 0.33 w 15 0.17 0.23 0.29 0.31 k 16 0.30 0.13 0.39 0.19 r 17 0.28 0.21 0.37 0.14 r |
| Binding TFs: | UP00012A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | AAATGAAC AATGAATG AATGAATT AATTAATA ATCAATTA ATGAATGA ATGAATGG ATGAATTA ATTCATTC GAAATGAA TAAATGAA TCAATGAA TCAATTGA TCACTGAA TCTTTTAA TGAATGAA TGTATTAA TTAATAAA TTAATTAA TTCATGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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