DNA Binding Motif

Accessions: UP00012A_2 (UniPROBE 20160601)
Names: Bbx, bobby sox homolog (Drosophila), Hbp2, HMG box transcription factor BBX, HMG box-containing protein 2
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: tvwybGTTAACaswkrr
Weblogo:
PSSM: P0 A C G T
01 0.20 0.23 0.18 0.40 t
02 0.30 0.27 0.34 0.08 v
03 0.49 0.15 0.06 0.31 w
04 0.22 0.27 0.21 0.30 y
05 0.16 0.26 0.26 0.31 b
06 0.07 0.04 0.81 0.07 G
07 0.06 0.03 0.09 0.81 T
08 0.05 0.10 0.05 0.80 T
09 0.82 0.05 0.09 0.04 A
10 0.75 0.18 0.03 0.05 A
11 0.16 0.69 0.04 0.11 C
12 0.64 0.14 0.16 0.06 a
13 0.14 0.27 0.42 0.17 s
14 0.28 0.23 0.16 0.33 w
15 0.17 0.23 0.29 0.31 k
16 0.30 0.13 0.39 0.19 r
17 0.28 0.21 0.37 0.14 r
Binding TFs: UP00012A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: AAATGAAC
AATGAATG
AATGAATT
AATTAATA
ATCAATTA
ATGAATGA
ATGAATGG
ATGAATTA
ATTCATTC
GAAATGAA
TAAATGAA
TCAATGAA
TCAATTGA
TCACTGAA
TCTTTTAA
TGAATGAA
TGTATTAA
TTAATAAA
TTAATTAA
TTCATGAA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.