DNA Binding Site
| Accessions: | TTCCGGAA (UniPROBE 20160601), PF0072.1.19 (JASPAR 2024), PF0072.1.4 (JASPAR 2024), PF0072.1.7 (JASPAR 2024), MA2169.1.17 (JASPAR 2024), MA2169.1.18 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | TTCCGGAA |
| Type: | Heterodimer |
| Binding TFs: | UP00335A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00463A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00331A (Fungal Zn(2)-Cys(6) binuclear cluster domain, PAS fold) UP00475A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00322A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Gal4-like dimerisation domain, Fungal specific transcription factor domain ) UP00013A / UP00408A (Ets-domain) UP00015A / UP00403A (Ets-domain) UP00049A (SAND domain) UP00072A (SAND domain) UP00085A / UP00405A (Ets-domain) UP00090A / UP00407A (Ets-domain) UP00273A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00277A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00290A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00305A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00315A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00350A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00404A (Ets-domain) UP00409A (Ets-domain) UP00410A (Ets-domain) UP00411A (Ets-domain) UP00412A (Ets-domain) UP00413A (Ets-domain) UP00414A (Ets-domain) UP00415A (Ets-domain) UP00416A (Ets-domain) UP00417A (Ets-domain) UP00418A (Ets-domain) UP00419A (Ets-domain) UP00420A (Ets-domain) UP00421A (Ets-domain) UP00422A (Ets-domain) UP00423A (Ets-domain) UP00424A (Ets-domain) G5EFT5 |
| Binding Motifs: | UP00290A_1 gwrastTTCCGGAAyrywrr UP00013A_1 mmawACCGGAAGTkhwv UP00015A_1 mkdwcsCGGAARtwa UP00049A_1 rwTwtmCGgAAAwt UP00072A_1 wdytACGACAAAwarc UP00085A_1 ydawgvGGAAsTdm UP00090A_1 wwcmmGGAArTwa UP00273A_1 ysvyhwtTCCGGAawrhyyc UP00277A_1 tcmawwACCGGcGwawkctar UP00305A_1 wyyCGGGyskmCGGAvmw UP00315A_1 TCCGnnnnnnnnnsCGGA UP00322A_1 yCGGgnnnnnnnnnnCCGr UP00331A_1 mrmwwdTTCCGGAACawmhr UP00335A_1 atyvmkaTCCCGGgawkkbt UP00350A_1 yCCGGsmkagwyCCGG UP00403A_1 smyswryTTCCGGsttk UP00404A_1 abshACTTCCGGkwky UP00405A_1 ykadGvGGAAGTdaak UP00407A_1 vhykwAyTTCCKgsttr UP00408A_1 mvwtACCGGAAGTrkwr UP00409A_1 kwAcsmGGAAGTwr UP00410A_1 mswtACCGGAAGYdsmr UP00411A_1 vtsmAyTTCCGGtwkc UP00412A_1 cdmaACwTCCGGtwyc UP00413A_1 wbkwACTTCCGGkwty UP00414A_1 crkkyACCGGAArtaaw UP00415A_1 vtgwryTTCCGGyarc UP00416A_1 mbsrAyTTCCGGtwky UP00417A_1 stsmAywTCCGGtggy UP00418A_1 dcmktAYTTCCGGytts UP00419A_1 rAAaGmGGAAGTwd UP00420A_1 ackyACCGGAAGydmms UP00421A_1 mswbaCCGGAAGTrrma UP00422A_1 rygaAyTTCCGGtaky UP00423A_1 cdmaACWTCCGGtmvc UP00424A_1 rbsaAyTTCCGGTwrw UP00013A_2 cydtywTccsmcysmh UP00015A_2 wwrkAkTTCCkAwsww UP00049A_2 ysCGtCGcktaawab UP00072A_2 ayggAAAkTCGTraaa UP00085A_2 maawttmvgGAAcc UP00090A_2 gytcmaaaAAaAamydy UP00463A_1 rcsbckwTCCGCGGAAmrggrs UP00475A_1 wyydkaaCCGGCCGGmakakta PF0072.1 TTCyrGAA MA2169.1 TTCyAGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed] Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. Elife : (2015). [Pubmed] |
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