Transcription Factor
| Accessions: | UP00315A (UniPROBE 20160601) |
| Names: | Hal9, Halotolerance protein 9, O0938, YOL089C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q12180 |
| Description: | Putative transcription factor containing a zinc finger; overexpression increases salt tolerance through increased expression of the ENA1 (Na+/Li+ extrusion pump) gene while gene disruption decrease... |
| Length: | 145 |
| Pfam Domains: | 51-88 Fungal Zn(2)-Cys(6) binuclear cluster domain |
| Sequence: (in bold interface residues) | 1 NVAYPNTIYSPTEHQSQFQTQQNRDISTMMEHTNSNDMSGSGKNLKKRVSKACDHCRKRK 60 61 IRCDEVDQQTKKCSNCIKFQLPCTFKHRDEILKKKRKLEIKHHATPGESLQTSNSISNPV 120 121 ASSSVPNSGRFELLNGNSPLESNII |
| Interface Residues: | 46, 47, 57, 59, 60, 61, 62, 78, 79 |
| 3D-footprint Homologues: | 1f5e_P, 1pyi_A, 2er8_C, 1hwt_C, 1d66_B, 3coq_A, 7uik_T |
| Binding Motifs: | UP00315A_1 TCCGnnnnnnnnnsCGGA |
| Binding Sites: | AACGGAAA AACGGAAC ATCCGGAT ATTCCGCG CAACGGAA CCGCGGAA CGACGGAA CGGATCCG GACGGAAA GAGCGGAA GCGGAACA GCGGAACC GGCGGAAC GTTCCGGA TCCGCGGA TTCCGGAA ACGGAAAC AGTTCCGC CGCGGAAC GACGGAAC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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