DNA Binding Site
| Accessions: | AACGGAAA (UniPROBE 20160601), MA0152.3.5 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Mus musculus |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AACGGAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00281A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00295A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00315A (Fungal Zn(2)-Cys(6) binuclear cluster domain) Q60591 (Rel homology domain (RHD), IPT/TIG domain) Q60591 |
| Binding Motifs: | UP00281A_1 mssabmrCGGArATwasdsgk UP00295A_1 sayhmrCGGAaATaagdcggw UP00315A_1 TCCGnnnnnnnnnsCGGA MA0152.3 aATGGAAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed] |
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