DNA Binding Motif
| Accessions: | UP00295A_1 (UniPROBE 20160601) |
| Names: | Not Available, Yrm1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | sayhmrCGGAaATaagdcggw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.09 0.53 0.29 0.10 s 02 0.49 0.09 0.22 0.21 a 03 0.15 0.33 0.19 0.33 y 04 0.28 0.25 0.18 0.29 h 05 0.27 0.44 0.15 0.14 m 06 0.38 0.15 0.44 0.03 r 07 0.06 0.76 0.10 0.07 C 08 0.08 0.03 0.84 0.05 G 09 0.03 0.02 0.88 0.06 G 10 0.69 0.05 0.20 0.06 A 11 0.60 0.03 0.15 0.21 a 12 0.79 0.05 0.05 0.11 A 13 0.22 0.03 0.05 0.70 T 14 0.62 0.02 0.12 0.24 a 15 0.58 0.17 0.13 0.12 a 16 0.24 0.21 0.39 0.16 g 17 0.32 0.12 0.30 0.26 d 18 0.22 0.47 0.16 0.14 c 19 0.19 0.25 0.44 0.13 g 20 0.07 0.10 0.59 0.24 g 21 0.31 0.14 0.07 0.49 w |
| Binding TFs: | UP00295A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AAAGAAAG AACGGAAA AAGAAAAA AATCTCCG AATTTCCG ACGGAAAT ACGGAGAA AGGGGGAA ATATCCGC ATTTCCGC ATTTCCGG CGGAAATA CGGAGATA CGGATATA CGGGAATA GGAGATAA GGGAATAA GGGGGAAA GGAAATAC GGAATTAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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