DNA Binding Motif

						

			
Accessions: UP00475A_1 (UniPROBE 20160601)

			
Names: Yer184c
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: wyydkaaCCGGCCGGmakakta
Weblogo: 
PSSM: P0      A      C      G      T
01   0.30   0.24   0.20   0.27      w
02   0.12   0.36   0.14   0.38      y
03   0.12   0.37   0.25   0.27      y
04   0.34   0.07   0.30   0.29      d
05   0.11   0.17   0.38   0.34      k
06   0.43   0.20   0.15   0.22      a
07   0.59   0.10   0.11   0.20      a
08   0.06   0.68   0.02   0.24      C
09   0.01   0.86   0.10   0.02      C
10   0.02   0.03   0.94   0.01      G
11   0.03   0.03   0.91   0.03      G
12   0.03   0.91   0.03   0.03      C
13   0.01   0.94   0.03   0.02      C
14   0.02   0.10   0.86   0.01      G
15   0.24   0.02   0.68   0.06      G
16   0.26   0.42   0.10   0.22      m
17   0.56   0.23   0.09   0.12      a
18   0.22   0.13   0.38   0.28      k
19   0.48   0.18   0.15   0.19      a
20   0.20   0.09   0.34   0.37      k
21   0.22   0.21   0.15   0.42      t
22   0.42   0.25   0.20   0.14      a
Binding TFs: UP00475A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain )
Binding Sites: ACTCCGGA
ATCCGGAT
ATTCCGGA
ATTTCCGG
CCGGAAAA
CCGGAACA
CGGATCCG
CGGCGCCG
GCCGCGGC
GTCCGGAC
GTTCCGGA
TATCCGGA
TCCGCGGA
TCCGGAAA
TCGGCCGA
TTCCGGAA
CCGCCGGC
CCGGCCGG
CGCCGGCG
GCCGAAAA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.