DNA Binding Motif
| Accessions: | UP00072A_1 (UniPROBE 20160601) |
| Names: | IRC900814, Not Available |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | wdytACGACAAAwarc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.37 0.14 0.17 0.32 w 02 0.27 0.19 0.25 0.28 d 03 0.16 0.33 0.10 0.41 y 04 0.08 0.21 0.10 0.61 t 05 0.95 0.02 0.01 0.02 A 06 0 0.99 0 0 C 07 0 0 0.99 0 G 08 0.94 0 0.05 0.01 A 09 0.18 0.76 0.03 0.02 C 10 0.92 0 0.07 0.01 A 11 0.97 0.01 0.01 0.02 A 12 0.73 0.05 0.01 0.21 A 13 0.27 0.13 0.07 0.53 w 14 0.33 0.21 0.22 0.24 a 15 0.25 0.20 0.31 0.24 r 16 0.17 0.40 0.19 0.24 c |
| Binding TFs: | UP00072A (SAND domain) |
| Binding Sites: | CACGAAAA AAAGTCGT AAATTCGT AATGTCGT AATTCGTA AATTTCGT ACGAAAAA ACGAAAAC ACGAAAAT ACGACAAT ATTTCGTA ATTTCGTG ATTTGTCG CGAAATTC GACGACAA TACGAAAA TACGACAA TTACGAAA TTCCGGAA ACGAAATC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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