DNA Binding Motif
| Accessions: | UP00331A_1 (UniPROBE 20160601) |
| Names: | Putative 60.3 kDa transcriptional regulatory protein in PRP5-THI2 intergenic region, YBR1622, Ybr239c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | mrmwwdTTCCGGAACawmhr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.29 0.28 0.22 0.20 m 02 0.25 0.21 0.35 0.19 r 03 0.32 0.28 0.24 0.17 m 04 0.54 0.08 0.13 0.25 w 05 0.27 0.23 0.15 0.34 w 06 0.25 0.21 0.25 0.29 d 07 0.01 0.03 0.01 0.95 T 08 0.05 0.01 0.01 0.92 T 09 0 0.96 0 0.03 C 10 0 0.97 0.02 0 C 11 0 0.02 0.97 0 G 12 0.03 0 0.96 0 G 13 0.92 0.01 0.01 0.05 A 14 0.95 0.01 0.03 0.01 A 15 0.03 0.79 0.05 0.13 C 16 0.29 0.24 0.24 0.24 a 17 0.37 0.16 0.16 0.31 w 18 0.32 0.29 0.17 0.23 m 19 0.28 0.32 0.13 0.27 h 20 0.25 0.18 0.36 0.21 r |
| Binding TFs: | UP00331A (Fungal Zn(2)-Cys(6) binuclear cluster domain, PAS fold) |
| Binding Sites: | AATCGGAA ACCGGAAC AGTTCCGA ATCGGAAC ATCGGAAT ATTCCGGA CACCGGAA CATCGGAA CCGGAACA CCGGAACC CCGGAACG CGTTCCGA GATCGGAA GGTTCCGA GTCGGAAC GTTCCGGA TATCGGAA TCGGAACA TTCCGGAA TATTCCGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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