DNA Binding Motif
| Accessions: | UP00273A_1 (UniPROBE 20160601) |
| Names: | J0922, Protein SIP4, Sip4, YJL089W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | ysvyhwtTCCGGAawrhyyc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.06 0.51 0.13 0.30 y 02 0.20 0.38 0.27 0.15 s 03 0.29 0.30 0.25 0.15 v 04 0.17 0.34 0.15 0.34 y 05 0.35 0.26 0.11 0.29 h 06 0.33 0.16 0.14 0.37 w 07 0.10 0.21 0.05 0.64 t 08 0.02 0.08 0.05 0.85 T 09 0.01 0.92 0.01 0.05 C 10 0.01 0.93 0.05 0.01 C 11 0.01 0.05 0.93 0.01 G 12 0.05 0.01 0.92 0.01 G 13 0.85 0.05 0.08 0.02 A 14 0.64 0.05 0.21 0.10 a 15 0.43 0.11 0.21 0.25 w 16 0.25 0.24 0.29 0.22 r 17 0.25 0.30 0.10 0.34 h 18 0.23 0.27 0.14 0.37 y 19 0.17 0.31 0.23 0.30 y 20 0.15 0.43 0.24 0.18 c |
| Binding TFs: | UP00273A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AACTCCGG ACTCATCG ACTCCGGA ACTCCGGC ATCCGGAA ATCTCATC CCGATGAG CCTCATCG CCTCCGGA CGATGACC CGATGCCG CTCATCCC CTCATCGA CTCATCGC CTCATCTC CTCCGGAG GCGATGCC TCCGGAAA TTCCGGAA GATCCGGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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