DNA Binding Site
| Accessions: | TCCGGAAA (UniPROBE 20160601), MA1673.2.10 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | TCCGGAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00335A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00475A (Fungal Zn(2)-Cys(6) binuclear cluster domain, Fungal specific transcription factor domain ) UP00013A / UP00408A (Ets-domain) UP00273A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00305A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00350A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00411A (Ets-domain) UP00415A (Ets-domain) UP00416A (Ets-domain) UP00422A (Ets-domain) O22131 (Protein of unknown function DUF260) O22131 |
| Binding Motifs: | UP00013A_1 mmawACCGGAAGTkhwv UP00273A_1 ysvyhwtTCCGGAawrhyyc UP00305A_1 wyyCGGGyskmCGGAvmw UP00335A_1 atyvmkaTCCCGGgawkkbt UP00350A_1 yCCGGsmkagwyCCGG UP00408A_1 mvwtACCGGAAGTrkwr UP00411A_1 vtsmAyTTCCGGtwkc UP00415A_1 vtgwryTTCCGGyarc UP00416A_1 mbsrAyTTCCGGtwky UP00422A_1 rygaAyTTCCGGtaky UP00013A_2 cydtywTccsmcysmh UP00475A_1 wyydkaaCCGGCCGGmakakta MA1673.2 GCCGGAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Pandey SK, Lee HW, Kim MJ, Cho C, Oh E, Kim J. LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis. Plant J 95:233-251 (2018). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.