DNA Binding Motif

Accessions: UP00404A_1 (UniPROBE 20160601)
Names: 2610036A20Rik, A230104O07Rik, AW111824, BB183398, E74-like factor 2, Elf2, ETS-related transcription factor Elf-2, EU32, MGC102660, Nerf, NERF-1A, NERF-1B, NERF-2, New ETS-related factor
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: abshACTTCCGGkwky
Weblogo:
PSSM: P0 A C G T
01 0.38 0.20 0.20 0.22 a
02 0.09 0.33 0.30 0.27 b
03 0.17 0.27 0.35 0.21 s
04 0.32 0.26 0.13 0.29 h
05 0.85 0.01 0.08 0.06 A
06 0 0.79 0.03 0.18 C
07 0.06 0 0 0.94 T
08 0.01 0 0 0.98 T
09 0 0.99 0 0 C
10 0 0.99 0 0.01 C
11 0 0.01 0.89 0.10 G
12 0 0.14 0.84 0.02 G
13 0.24 0.06 0.31 0.39 k
14 0.43 0.12 0.10 0.36 w
15 0.20 0.11 0.26 0.42 k
16 0.14 0.36 0.16 0.34 y
Binding TFs: UP00404A (Ets-domain)
Binding Sites: AACCGGAA
AACTTCCG
ACCCGGAA
ACCGGAAG
ACTTCCGC
ACTTCCTG
AGTTCCGG
ATCCGGAA
ATTTCCGG
CACTTCCG
CCCGGAAA
CCCGGAAG
CCGGAAAC
CCGGAAGA
CCGGAAGC
CGGAAGTA
CGGAAGTC
CTTCCGGA
TACCGGAA
TTCCGGAA
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.