DNA Binding Motif
| Accessions: | UP00049A_1 (UniPROBE 20160601) |
| Names: | nuclear antigen Sp100, Nuclear autoantigen Sp-100, Nuclear dot-associated Sp100 protein, Sp100, Speckled 100 kDa |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | rwTwtmCGgAAAwt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.40 0.13 0.34 0.13 r 02 0.32 0.03 0.06 0.59 w 03 0.16 0.03 0.04 0.77 T 04 0.27 0.15 0.04 0.54 w 05 0.22 0.24 0.17 0.36 t 06 0.31 0.30 0.17 0.22 m 07 0 0.99 0.01 0 C 08 0 0.12 0.87 0 G 09 0.09 0.09 0.59 0.23 g 10 0.78 0.08 0.06 0.08 A 11 0.87 0.01 0.03 0.09 A 12 0.71 0.05 0.03 0.22 A 13 0.49 0.14 0.10 0.28 w 14 0.19 0.11 0.21 0.49 t |
| Binding TFs: | UP00049A (SAND domain) |
| Binding Sites: | AACGACGA AATCGCGA AATTTCCG ATATCGCG ATTCCGCG ATTGCGCG ATTTCCGG ATTTCGCG ATTTTCCG CGCGAAAA CGCGACAA CGCGCAAA CGTCGAAA GATTTCGC GTCGTTTA TACGGAAA TATCGCGA TCGCGAAA TCGCGTAA TTCCGGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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