DNA Binding Motif
| Accessions: | UP00419A_1 (UniPROBE 20160601) |
| Names: | AU019198, C76795, Prf, Pu.1-related factor, Spi-C transcription factor (Spi-1/PU.1 related), Spic, Transcription factor Spi-C |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | rAAaGmGGAAGTwd |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.37 0.18 0.30 0.15 r 02 0.73 0.06 0.04 0.16 A 03 0.71 0.05 0.11 0.14 A 04 0.64 0.06 0.07 0.23 a 05 0.13 0.11 0.69 0.08 G 06 0.27 0.52 0.21 0.01 m 07 0.02 0 0.98 0 G 08 0 0 0.99 0 G 09 0.98 0 0 0.01 A 10 0.97 0 0 0.02 A 11 0.04 0.13 0.82 0.01 G 12 0.03 0.05 0.02 0.91 T 13 0.32 0.05 0.17 0.46 w 14 0.34 0.11 0.28 0.26 d |
| Binding TFs: | UP00419A (Ets-domain) |
| Binding Sites: | AACTTCCC AACTTCCG AACTTCCT AAGAGGAA ACTTCCCC ACTTCCCT ACTTCCGC ACTTCCGG ACTTCCTA ACTTCCTC ACTTCCTG AGCGGAAG AGGAAGTA AGGAAGTG CACTTCCG CGGAAGTA CTTCCGCA GGAAGTAA GGGAAGTA TTCCGGAA |
| Publications: | Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed] |
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