DNA Binding Motif

Accessions: UP00408A_1 (UniPROBE 20160601)
Names: alpha, E4tf1a, GA repeat binding protein, GA-binding protein alpha chain, GABP-alpha subunit, Gabpa
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: mvwtACCGGAAGTrkwr
Weblogo:
PSSM: P0 A C G T
01 0.36 0.39 0.13 0.13 m
02 0.29 0.31 0.25 0.15 v
03 0.36 0.22 0.15 0.27 w
04 0.20 0.14 0.19 0.47 t
05 0.78 0.04 0.11 0.07 A
06 0.02 0.93 0.04 0.01 C
07 0.04 0.95 0.01 0 C
08 0 0 0.99 0 G
09 0 0 0.99 0 G
10 0.99 0 0 0.01 A
11 0.88 0 0 0.12 A
12 0.24 0.03 0.73 0.01 G
13 0.01 0.09 0.01 0.88 T
14 0.26 0.16 0.34 0.24 r
15 0.16 0.19 0.28 0.37 k
16 0.34 0.22 0.17 0.27 w
17 0.32 0.17 0.27 0.24 r
Binding TFs: UP00408A (Ets-domain)
Binding Sites: AACCGGAA
AACTTCCG
ACATCCGG
ACCGGAAA
ACCGGATG
ACTTCCGG
ATTTCCGG
CACCGGAA
CACTTCCG
CCGGAAAC
CCGGAAGC
CGGAAGTA
CGGAAGTC
CTTCCGGA
CTTCCGGC
GACCGGAA
GCCGGAAA
TACCGGAA
TCCGGAAA
TTCCGGAA
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.