DNA Binding Motif

						

			
Accessions: UP00408A_1 (UniPROBE 20160601)

			
Names: alpha, E4tf1a, GA repeat binding protein, GA-binding protein alpha chain, GABP-alpha subunit, Gabpa
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: mvwtACCGGAAGTrkwr
Weblogo: 
PSSM: P0      A      C      G      T
01   0.36   0.39   0.13   0.13      m
02   0.29   0.31   0.25   0.15      v
03   0.36   0.22   0.15   0.27      w
04   0.20   0.14   0.19   0.47      t
05   0.78   0.04   0.11   0.07      A
06   0.02   0.93   0.04   0.01      C
07   0.04   0.95   0.01      0      C
08      0      0   0.99      0      G
09      0      0   0.99      0      G
10   0.99      0      0   0.01      A
11   0.88      0      0   0.12      A
12   0.24   0.03   0.73   0.01      G
13   0.01   0.09   0.01   0.88      T
14   0.26   0.16   0.34   0.24      r
15   0.16   0.19   0.28   0.37      k
16   0.34   0.22   0.17   0.27      w
17   0.32   0.17   0.27   0.24      r
Binding TFs: UP00408A (Ets-domain)
Binding Sites: AACCGGAA
AACTTCCG
ACATCCGG
ACCGGAAA
ACCGGATG
ACTTCCGG
ATTTCCGG
CACCGGAA
CACTTCCG
CCGGAAAC
CCGGAAGC
CGGAAGTA
CGGAAGTC
CTTCCGGA
CTTCCGGC
GACCGGAA
GCCGGAAA
TACCGGAA
TCCGGAAA
TTCCGGAA
			
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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