Transcription Factor
| Accessions: | UP00423A (UniPROBE 20160601) |
| Names: | EG432800, Gm5454, Predicted gene 5454 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | D3Z7Q1 |
| Description: | Predicted gene 5454: Ensembl Gene ID: ENSMUSG00000047643, Transcript ID: ENSMUST00000052030, Protein ID: ENSMUSP00000055525 |
| Length: | 116 |
| Pfam Domains: | 17-98 Ets-domain |
| Sequence: (in bold interface residues) | 1 EPGMYREGPMYQWRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQ 60 61 KNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLL |
| Interface Residues: | 57, 69, 70, 72, 73, 74, 76, 77, 91 |
| 3D-footprint Homologues: | 6sjf_B, 4uno_A, 3jtg_A, 1dux_F, 3zp5_A, 7jsa_J, 4mhg_A, 2stt_A, 8ee9_F, 4l18_B, 4lg0_B, 1yo5_C, 4bqa_A, 1awc_A, 4iri_A, 1bc8_C |
| Binding Motifs: | UP00423A_1 cdmaACWTCCGGtmvc |
| Binding Sites: | AACCGGAA ACATCCGG ACCGGAAA ACCGGAAC ACCGGAAG ACCGGATG ACTTCCGC AGTTCCGG ATTTCCGG CACCGGAA CCGGAAAC CCGGAAGC CCGGATGC CGGAAGTA CGGAAGTC CTTCCGGA CTTCCGGC GACCGGAA TACCGGAA TTCCGGAA |
| Publications: | Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed] |
| Related annotations: | PaperBLAST |
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