Transcription Factor
| Accessions: | UP00015A (UniPROBE 20160601), UP00403A (UniPROBE 20160601) |
| Names: | 9030625L19Rik, AU019492, Ehf, ets homologous factor |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q922E8 |
| Description: | ets homologous factor: Mus musculus EHF (Ehf) mRNA, complete cds |
| Length: | 110 |
| Pfam Domains: | 17-100 Ets-domain |
| Sequence: (in bold interface residues) | 1 QDHPVKSHTKKHNPRGTHLWEFIRDILLSPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 60 61 KKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN |
| Interface Residues: | 71, 72, 74, 75, 76, 78, 79, 93 |
| 3D-footprint Homologues: | 8ee9_F, 4mhg_A, 2stt_A, 4uno_A, 3jtg_A, 1dux_F, 7jsa_J, 3zp5_A, 4lg0_B, 1yo5_C, 4bqa_A, 1awc_A, 4iri_A, 1bc8_C, 4l18_B |
| Binding Motifs: | UP00015A_1 mkdwcsCGGAARtwa UP00403A_1 smyswryTTCCGGsttk UP00015A_2 wwrkAkTTCCkAwsww |
| Binding Sites: | AACTTCCG AACTTCCT AAGGAAGT ACCCGGAA ACGGAAGT ACTTCCGC ACTTCCGG ACTTCCTG AGGAAGTA ATTTCCGC CACTTCCG CCCGGAAA CCCGGAAG CCGGAAAC CCGGAAGC CGGAAGTA CTTCCGGA CTTCCGGC GGAAGTAA TTCCGGAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.