DNA Binding Site
| Accessions: | CCCGGAAA (UniPROBE 20160601), MA1673.2.19 (JASPAR 2024), MA1673.2.3 (JASPAR 2024) |
| Organisms: | Mus musculus, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCCGGAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00015A / UP00403A (Ets-domain) UP00090A / UP00407A (Ets-domain) UP00404A (Ets-domain) UP00409A (Ets-domain) UP00413A (Ets-domain) UP00418A (Ets-domain) O22131 (Protein of unknown function DUF260) O22131 |
| Binding Motifs: | UP00015A_1 mkdwcsCGGAARtwa UP00090A_1 wwcmmGGAArTwa UP00403A_1 smyswryTTCCGGsttk UP00404A_1 abshACTTCCGGkwky UP00407A_1 vhykwAyTTCCKgsttr UP00409A_1 kwAcsmGGAAGTwr UP00413A_1 wbkwACTTCCGGkwty UP00418A_1 dcmktAYTTCCGGytts UP00015A_2 wwrkAkTTCCkAwsww UP00090A_2 gytcmaaaAAaAamydy MA1673.2 GCCGGAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Pandey SK, Lee HW, Kim MJ, Cho C, Oh E, Kim J. LBD18 uses a dual mode of a positive feedback loop to regulate ARF expression and transcriptional activity in Arabidopsis. Plant J 95:233-251 (2018). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.