DNA Binding Motif

Accessions: UP00407A_1 (UniPROBE 20160601)
Names: E74-like factor 3, Elf3, ESE-1, ESX, jen
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: vhykwAyTTCCKgsttr
Weblogo:
PSSM: P0 A C G T
01 0.31 0.26 0.26 0.17 v
02 0.27 0.30 0.12 0.32 h
03 0.14 0.32 0.12 0.42 y
04 0.22 0.22 0.30 0.26 k
05 0.32 0.09 0.03 0.56 w
06 0.71 0.01 0.21 0.07 A
07 0.01 0.53 0.02 0.44 y
08 0.07 0 0.01 0.92 T
09 0.01 0.01 0 0.98 T
10 0.01 0.97 0.01 0.01 C
11 0.01 0.98 0.01 0.01 C
12 0.01 0.03 0.69 0.28 K
13 0.03 0.24 0.59 0.14 g
14 0.19 0.28 0.30 0.23 s
15 0.22 0.08 0.04 0.66 t
16 0.19 0.09 0.13 0.59 t
17 0.30 0.18 0.31 0.21 r
Binding TFs: UP00407A (Ets-domain)
Binding Sites: AACTTCCG
AACTTCCT
AAGGAAAT
AATTTCCG
AATTTCCT
ACCCGGAA
ACTTCCGC
ACTTCCGG
ACTTCCTG
AGGAAGTA
ATTTCCGC
ATTTCCTG
CACTTCCG
CCCGGAAA
CCCGGAAG
CGGAAATA
CGGAAGTA
CTTCCGGC
GGAAGTAA
TTCCGGAA
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

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