DNA Binding Motif

						

			
Accessions: UP00420A_1 (UniPROBE 20160601)

			
Names: D430049E23Rik, Elk3, Erp, Etrp, ETS domain-containing protein Elk-3, ETS-related protein ERP, ETS-related protein NET, member of ETS oncogene family, Sap-2
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: ackyACCGGAAGydmms
Weblogo: 
PSSM: P0      A      C      G      T
01   0.42   0.17   0.20   0.22      a
02   0.25   0.38   0.22   0.16      c
03   0.17   0.20   0.33   0.30      k
04   0.15   0.34   0.17   0.34      y
05   0.68   0.05   0.18   0.09      A
06   0.02   0.92   0.06   0.01      C
07   0.09   0.91      0      0      C
08   0.01      0   0.99      0      G
09      0      0   0.99      0      G
10   0.98      0      0   0.02      A
11   0.90   0.01      0   0.09      A
12   0.08   0.18   0.73   0.01      G
13   0.01   0.34   0.06   0.59      y
14   0.33   0.11   0.30   0.26      d
15   0.26   0.38   0.19   0.17      m
16   0.42   0.26   0.17   0.15      m
17   0.21   0.32   0.28   0.19      s
Binding TFs: UP00420A (Ets-domain)
Binding Sites: AACCGGAA
AACTTCCG
ACCGGAAA
ACCGGAAC
ACTTCCGC
ACTTCCGG
AGCGGAAG
AGTTCCGG
ATTTCCGG
CACCGGAA
CACTTCCG
CCCGGAAG
CCGGAAAC
CCGGAAGC
CCGGAAGG
CTTCCGGA
CTTCCGGC
GACCGGAA
TACCGGAA
TTCCGGAA
			
Publications: Wei G-H, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Genome-wide analysis of ETS family DNA-binding in vitro and in vivo. The EMBO Journal. Epub 2010 Jun 1. doi:10.1038/emboj.2010.106 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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