DNA Binding Site

						

			
Accessions: ATAATTAT (UniPROBE 20160601)

			
Organisms: Mus musculus, Plasmodium falciparum, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ATAATTAT
Type: Heterodimer
Binding TFs: UP00263A (Homeobox domain)
UP00110A (Homeobox domain)
UP00113A (Homeobox domain)
UP00126A (Homeobox domain)
UP00154A (Homeobox domain)
UP00168A (Homeobox domain)
UP00172A (Homeobox domain, Homeobox KN domain)
UP00200A (Homeobox domain)
UP00202A (Homeobox domain)
UP00206A (Homeobox domain)
UP00218A (Homeobox domain)
UP00234A (Homeobox domain)
UP00238A (Homeobox domain)
UP00244A (Homeobox domain)
UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00255A (Homeobox domain)
UP00260A (Homeobox domain)
UP00446A (AP2 domain)
UP00512A (Homeobox domain)
UP00584B (Homeobox domain)
UP00584D (Homeobox domain)
UP00584E (Homeobox domain)
UP00595A (Homeobox domain)
UP00595B (Homeobox domain)
UP00595C (Homeobox domain)
UP00595D (Homeobox domain)
UP00596A (Homeobox domain)
UP00603B (Homeobox domain)
UP00604D (Homeobox domain)
UP00604E (Homeobox domain)
UP00607D (Zinc finger, C4 type (two domains))
UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00610B (Homeobox domain, 'Paired box' domain)
UP00611A (Homeobox domain, 'Paired box' domain)
UP00611D (Homeobox domain, 'Paired box' domain)
UP00614B (Homeobox domain)
UP00614E (Homeobox domain)
UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00624A (Homeobox domain)
UP00624B (Homeobox domain)
UP00626C (Homeobox domain)
UP00627C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00627G (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Motifs: UP00200A_2 rrtwATTAATKAykyc
UP00255A_1 twrttaATTAwtaawwr
UP00110A_1 bcrcdaTAATTAcmswc
UP00113A_1 CgmrTTAATTAAywawm
UP00126A_1 vrdrYAATTRbhymag
UP00154A_1 kmrmdaTAATTAcmswm
UP00168A_1 taadTAATTAATrgctw
UP00172A_1 cgmrTTAATTAAkwdac
UP00200A_1 gmwwATTAATTAmyybg
UP00202A_1 btgarrTAATTAay
UP00206A_1 stakTAATTAmtkshr
UP00218A_1 bktmAtTAATkAakwm
UP00234A_1 krmwayTAATTAatwm
UP00238A_1 gawwwTTAATKAmtkyk
UP00244A_1 kwatyAATTAATaayww
UP00248A_1 mgwmyTAATTArkwmda
UP00260A_1 yrarkTAATTAmtwamw
UP00263A_1 wsykGyAATTAAtarw
UP00446A_1 rtycawwatGTGTGTgadkywwk
UP00512A_1 aawraarGGTAATTAmydkwkw
UP00584B_1 wcywgmvaysayATGTactarms
UP00584B_2 wtwhtddkmTAATTAvmshwkrw
UP00584D_1 Trrkdgbayaattrtwrmtwdw
UP00584E_2 wymdwkgkTAATTAwcmwatwaw
UP00595A_1 TdanrbbrTAATTAytrywawww
UP00595A_2 ttmyywrrTAATTAyyawtwwA
UP00595B_1 wamktwTAATywATTAtartttt
UP00595B_2 ttmyyargTAATTAcydwtwwA
UP00595C_1 TwasksyATAATTAtwGgtwkdr
UP00595C_2 aakwywATaTATAyATwwhamw
UP00595D_1 dkwdwwATrTATAtATartrdv
UP00596A_1 rAawwaATAATmATTAkycwwwr
UP00603B_1 wtwtrtgyAATTAwttaaktysw
UP00603B_2 ssgksgcAkYAATTAskmmymya
UP00604D_1 amaTtawatavrtatwywaTwa
UP00604E_1 tawwywATrTwwATtAwytaAA
UP00607D_1 twsywmyaTATwTAsTgstwwma
UP00609E_1 kawmktTAATCGATTActrgad
UP00609H_1 kawmktTAATCGATTAcyksad
UP00610B_1 twwwkcbkttTAATTAasmasgk
UP00611A_2 tymwakgkTAATTArcatdwwmw
UP00611D_1 whwydkgkTAATTAkcawawwaw
UP00614B_1 wsvgakssTAATTAgsmawwwmw
UP00614E_1 wbmrwkgvtrATyakcmwwwwmw
UP00616A_1 ykwrytwATTATGCAkaywkhm
UP00616B_1 hkwrythATTATGCRgayakhm
UP00616C_1 kgacgyyyTAATTArwcrtcrr
UP00618A_1 wwvrybagcTAATTArkgywmt
UP00618B_1 wyhcgrgcTAATTAkcycarwaw
UP00618C_1 twwmrybagcTAATTArbrywmt
UP00624A_1 wwmdwkgbTAATTAkcmawwawa
UP00624B_1 trvgwbgsTaATtAgcmwawwmw
UP00626C_1 tmmmamvTTAATTAAkwrtmtg
UP00627C_1 TwtTwawATAmAwATAAwwThkG
UP00627F_1 TwtTwmwATAmAwATAAwwtwkG
UP00627G_1 TwtTtawATAmAwATAAwwThkG
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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