Transcription Factor

Accessions: UP00446A (UniPROBE 20160601)
Names: None, PFD0985w_D1, putative, transcription factor with AP2 domain(s)
Organisms: Plasmodium falciparum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Description: transcription factor with AP2 domain(s), putative: putative Plasmodium falciparum transcription factor, AP2 domain
Length: 60
Pfam Domains: 4-51 AP2 domain
Sequence:
(in bold interface residues)
1 GPLPTGVYFDSARKLWRCQWKENGKFKTKGFSLIHYSTLEEARKQCILYRCDVGNIPVKS 60
Interface Residues: 33, 39, 40
3D-footprint Homologues: 1u1q_A, 8d4a_A
Binding Motifs: UP00446A_1 rtycawwatGTGTGTgadkywwk
Binding Sites: ATAATTAT
GCACACAC
AACACACA
AAGTGTGT
ACACACAA
ACACACAC
ACACACAT
ACACACCT
AGTGTGTA
AGTGTGTG
ATACACAC
CACACACA
CACACACC
CCACACAC
CTACACAC
GGTGTGTA
GTGTGTAA
GTGTGTGA
GTGTGTTA
TACACACA
Publications: Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed]
Related annotations: PaperBLAST

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