DNA Binding Site
| Accessions: | AACAATTG (UniPROBE 20160601), MA0087.3.18 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AACAATTG |
| Type: | Heterodimer |
| Binding TFs: | UP00004A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00014A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00023A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00030A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00051A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00064A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00069A (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor) UP00071A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00091A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00096A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00101A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00307A (Homeobox domain, Homeobox KN domain) P35710 (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00034A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) P35710 |
| Binding Motifs: | UP00004A_1 / UP00069A_7 khtaATTATAATwwdm UP00014A_1 / UP00069A_11 mwaAACAATTrAwhw UP00016A_1 khkwATTATAATrwtm UP00023A_1 rwdgAACAATkraayt UP00030A_1 / UP00069A_1 wkwarAACAAWGraywa UP00034A_1 mwtrwwrAACAATarawythyw UP00051A_1 kkatywATTGTTmwkwa UP00064A_1 / UP00069A_13 twyhATTGTTbtmamw UP00069A_15 wwtyaATTcAwTamdk UP00071A_1 hwtwATTATAATwdwk UP00069A_9 wrkwgAACAATwrrtwt UP00091A_1 wwdrgAACAATwaahw UP00069A_5 / UP00096A_1 wtwrgAACAATwwwtw UP00069A_3 / UP00101A_1 twATTGTTcthawh UP00307A_1 htdtwrAACAATAGwmytmc UP00004A_2 / UP00069A_8 ykyasACAATrgmks UP00014A_2 / UP00069A_12 gwycacATTCAtryrat UP00016A_2 yydmdraACAATrrryg UP00023A_2 tmwgATTATAATmcgs UP00030A_2 / UP00069A_2 arAATTGTywkrrw UP00034A_2 gtsswaATTrwstgwgkrcksy UP00051A_2 acATTCAtgamass UP00064A_2 / UP00069A_14 gkrsyraATtyrwdhm UP00069A_10 btramTGwmATtysr UP00069A_16 myaTaATTGTTakys UP00069A_4 / UP00101A_2 mmwyasACAAAGrawt UP00069A_6 / UP00096A_2 rtrytGGgtGGGwawwt UP00071A_2 vvycwATTGTtcckhkr UP00091A_2 wwtCatmAttwasdd MA0087.3 AACAATGG |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Denny P., Swift S., Connor F., Ashworth A. An SRY-related gene expressed during spermatogenesis in the mouse encodes a sequence-specific DNA-binding protein. EMBO J. 11:3705-3712 (1992). [Pubmed] |
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