DNA Binding Site

Accessions: AACAATTG (UniPROBE 20160601), MA0087.3.18 (JASPAR 2024)
Organisms: Mus musculus, Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: AACAATTG
Type: Heterodimer
Binding TFs: UP00004A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00014A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00023A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00030A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00051A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00064A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00069A (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
UP00071A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00091A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00096A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00101A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00307A (Homeobox domain, Homeobox KN domain)
P35710 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00034A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
P35710
Binding Motifs: UP00004A_1 / UP00069A_7 khtaATTATAATwwdm
UP00014A_1 / UP00069A_11 mwaAACAATTrAwhw
UP00016A_1 khkwATTATAATrwtm
UP00023A_1 rwdgAACAATkraayt
UP00030A_1 / UP00069A_1 wkwarAACAAWGraywa
UP00034A_1 mwtrwwrAACAATarawythyw
UP00051A_1 kkatywATTGTTmwkwa
UP00064A_1 / UP00069A_13 twyhATTGTTbtmamw
UP00069A_15 wwtyaATTcAwTamdk
UP00071A_1 hwtwATTATAATwdwk
UP00069A_9 wrkwgAACAATwrrtwt
UP00091A_1 wwdrgAACAATwaahw
UP00069A_5 / UP00096A_1 wtwrgAACAATwwwtw
UP00069A_3 / UP00101A_1 twATTGTTcthawh
UP00307A_1 htdtwrAACAATAGwmytmc
UP00004A_2 / UP00069A_8 ykyasACAATrgmks
UP00014A_2 / UP00069A_12 gwycacATTCAtryrat
UP00016A_2 yydmdraACAATrrryg
UP00023A_2 tmwgATTATAATmcgs
UP00030A_2 / UP00069A_2 arAATTGTywkrrw
UP00034A_2 gtsswaATTrwstgwgkrcksy
UP00051A_2 acATTCAtgamass
UP00064A_2 / UP00069A_14 gkrsyraATtyrwdhm
UP00069A_10 btramTGwmATtysr
UP00069A_16 myaTaATTGTTakys
UP00069A_4 / UP00101A_2 mmwyasACAAAGrawt
UP00069A_6 / UP00096A_2 rtrytGGgtGGGwawwt
UP00071A_2 vvycwATTGTtcckhkr
UP00091A_2 wwtCatmAttwasdd
MA0087.3 AACAATGG
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Denny P., Swift S., Connor F., Ashworth A. An SRY-related gene expressed during spermatogenesis in the mouse encodes a sequence-specific DNA-binding protein. EMBO J. 11:3705-3712 (1992). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.