Transcription Factor
| Accessions: | UP00023A (UniPROBE 20160601) |
| Names: | Sox30, SRY-box containing gene 30, Transcription factor SOX-30 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q8CGW4 |
| Description: | SRY-box containing gene 30: Mus musculus SRY-box containing gene 30 (Sox30) |
| Length: | 101 |
| Pfam Domains: | 17-84 HMG (high mobility group) box 18-80 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 DAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSE 60 61 EQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSVS |
| Interface Residues: | 19, 22, 24, 25, 28, 32, 43, 44, 45, 47, 48, 51, 57, 86, 88, 90, 93 |
| 3D-footprint Homologues: | 4y60_C, 2gzk_A, 1o4x_B, 6jrp_D, 2lef_A, 3u2b_C, 1qrv_A, 7m5w_A, 3f27_D, 4s2q_D, 3tmm_A, 1j5n_A, 3tq6_B, 1hry_A, 7zie_A, 1tau_A |
| Binding Motifs: | UP00023A_1 rwdgAACAATkraayt UP00023A_2 tmwgATTATAATmcgs |
| Binding Sites: | AATTGTTG AACAATAG AACAATCA AACAATGA AACAATGC AACAATGG AACAATTA AACAATTG AAGACAAT AATTGTTC ACAACAAT ACAATGGA ACAATTGT AGAACAAT AGACAATG ATTGTTAA ATTGTTCG ATTGTTGA CAACAATG CCATTGTC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.