Transcription Factor
| Accessions: | UP00016A (UniPROBE 20160601) |
| Names: | MGC129295, sex determining region of Chr Y, Sex-determining region Y protein, Sry, Tdf, Tdy, Testis-determining factor |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q05738 |
| Description: | sex determining region of Chr Y |
| Length: | 88 |
| Pfam Domains: | 4-72 HMG (high mobility group) box 5-61 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 EGHVKRPMNAFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQEAQRL 60 61 KILHREKYPNYKYQPHRRAKVSQRSGIL |
| Interface Residues: | 6, 9, 11, 12, 13, 15, 19, 30, 31, 32, 33, 35, 73, 77, 78 |
| 3D-footprint Homologues: | 4y60_C, 2gzk_A, 1o4x_B, 2lef_A, 3u2b_C, 1qrv_A, 6jrp_D, 3f27_D, 4s2q_D, 7m5w_A, 3tmm_A, 1j5n_A, 3tq6_B, 1hry_A, 1ckt_A, 5oqj_O, 1ytb_A |
| Binding Motifs: | UP00016A_1 khkwATTATAATrwtm UP00016A_2 yydmdraACAATrrryg |
| Binding Sites: | ATTATAAT AAAACAAT AAACAATA AAACAATT AACAATAA AACAATGC AACAATGG AACAATGT AACAATTG AAGACAAT AATTGTTA AATTGTTC ACAACAAT AGAACAAT AGACAATA ATTGTTAA ATTGTTCG ATTGTTTA CATTGTTA GAACAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.