Transcription Factor
| Accessions: | UP00034A (UniPROBE 20160601) |
| Names: | mSOX7, Sox-7, Sox7, SRY-box containing gene 7, Transcription factor SOX-7 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | SRY-box containing gene 7 |
| Length: | 101 |
| Pfam Domains: | 17-85 HMG (high mobility group) box 17-78 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 PPAVPRPSGDKSSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTL 60 61 SQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQGKRLCKRV |
| Interface Residues: | 19, 22, 24, 25, 28, 32, 43, 44, 45, 48, 86, 90 |
| 3D-footprint Homologues: | 1j5n_A, 6jrp_D, 2lef_A, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 3tmm_A, 4y60_C, 2gzk_A, 3tq6_B, 1hry_A |
| Binding Motifs: | UP00034A_1 mwtrwwrAACAATarawythyw UP00034A_2 gtsswaATTrwstgwgkrcksy |
| Binding Sites: | AAAACAAT AAACAATT AAATTGTT AACAATAA AACAATAG AACAATTA AACAATTG AAGACAAT AATTGTTA AATTGTTC ACAACAAT ACAATTGT AGAACAAT AGACAATA ATTGTTAA ATTGTTCA ATTGTTCG ATTGTTTC GAACAATA TAACAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.