DNA Binding Motif
| Accessions: | UP00023A_1 (UniPROBE 20160601) |
| Names: | Sox30, SRY-box containing gene 30, Transcription factor SOX-30 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | rwdgAACAATkraayt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.37 0.10 0.32 0.20 r 02 0.33 0.18 0.16 0.33 w 03 0.29 0.08 0.29 0.33 d 04 0.16 0.23 0.44 0.17 g 05 0.72 0.05 0.20 0.03 A 06 0.96 0 0 0.04 A 07 0 0.86 0.01 0.12 C 08 0.98 0.01 0 0.01 A 09 0.98 0 0.02 0 A 10 0.07 0 0.01 0.92 T 11 0.16 0.11 0.47 0.27 k 12 0.33 0.09 0.51 0.06 r 13 0.46 0.18 0.15 0.21 a 14 0.39 0.24 0.15 0.22 a 15 0.19 0.27 0.18 0.37 y 16 0.18 0.24 0.17 0.41 t |
| Binding TFs: | UP00023A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | AATTGTTG AACAATAG AACAATCA AACAATGA AACAATGC AACAATGG AACAATTA AACAATTG AAGACAAT AATTGTTC ACAACAAT ACAATGGA ACAATTGT AGAACAAT AGACAATG ATTGTTAA ATTGTTCG ATTGTTGA CAACAATG CCATTGTC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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