Transcription Factor
| Accessions: | UP00004A (UniPROBE 20160601) |
| Names: | Sox-14, Sox14, SRY-box containing gene 14, Transcription factor SOX-14 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q04892 |
| Description: | SRY-box containing gene 14: Mus musculus SRY-box containing gene 14, mRNA |
| Length: | 101 |
| Pfam Domains: | 17-85 HMG (high mobility group) box 18-80 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 PAPARLAGTMSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE 60 61 AEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRY |
| Interface Residues: | 19, 22, 24, 25, 26, 28, 32, 36, 43, 44, 45, 48, 86, 90 |
| 3D-footprint Homologues: | 4s2q_D, 1qrv_A, 3tmm_A, 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 2lef_A, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 1hry_A, 3tq6_B, 1ckt_A, 7zie_A |
| Binding Motifs: | UP00004A_1 khtaATTATAATwwdm UP00004A_2 ykyasACAATrgmks |
| Binding Sites: | ATTATAAT AAACAATT AACAATAG AACAATGG AACAATTA AACAATTC AACAATTG AAGACAAT AATTGTTA ACAACAAT ACAATAGA ACAATTAT ACAATTGT AGAACAAT AGACAATA ATTGTTAA ATTGTTCG ATTGTTTC CAATTGTC TAACAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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