DNA Binding Motif
| Accessions: | UP00016A_2 (UniPROBE 20160601) |
| Names: | MGC129295, sex determining region of Chr Y, Sex-determining region Y protein, Sry, Tdf, Tdy, Testis-determining factor |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | yydmdraACAATrrryg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.29 0.12 0.37 y 02 0.24 0.28 0.21 0.27 y 03 0.33 0.13 0.26 0.28 d 04 0.26 0.30 0.21 0.22 m 05 0.26 0.18 0.29 0.27 d 06 0.32 0.18 0.44 0.06 r 07 0.57 0.20 0.18 0.05 a 08 0.88 0.02 0.03 0.06 A 09 0.03 0.86 0.05 0.06 C 10 0.92 0.02 0.04 0.02 A 11 0.91 0.03 0.03 0.03 A 12 0.13 0.04 0.03 0.80 T 13 0.41 0.07 0.28 0.24 r 14 0.25 0.18 0.39 0.18 r 15 0.28 0.23 0.32 0.16 r 16 0.18 0.33 0.16 0.34 y 17 0.17 0.21 0.45 0.16 g |
| Binding TFs: | UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | ATTATAAT AAAACAAT AAACAATA AAACAATT AACAATAA AACAATGC AACAATGG AACAATGT AACAATTG AAGACAAT AATTGTTA AATTGTTC ACAACAAT AGAACAAT AGACAATA ATTGTTAA ATTGTTCG ATTGTTTA CATTGTTA GAACAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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