DNA Binding Site

Accessions: TGACGTCA (UniPROBE 20160601), PF0009.1.1 (JASPAR 2024), PF0009.1.16 (JASPAR 2024), PF0009.1.17 (JASPAR 2024), PF0009.1.3 (JASPAR 2024), PF0009.1.6 (JASPAR 2024), PF0009.1.7 (JASPAR 2024), PF0009.1.8 (JASPAR 2024), PF0009.1.9 (JASPAR 2024), PF0014.1.1 (JASPAR 2024), PF0014.1.10 (JASPAR 2024), PF0014.1.11 (JASPAR 2024), PF0014.1.12 (JASPAR 2024), PF0014.1.13 (JASPAR 2024), PF0014.1.14 (JASPAR 2024), PF0014.1.15 (JASPAR 2024), PF0014.1.16 (JASPAR 2024), PF0014.1.17 (JASPAR 2024), PF0014.1.18 (JASPAR 2024), PF0014.1.19 (JASPAR 2024), PF0014.1.2 (JASPAR 2024), PF0014.1.20 (JASPAR 2024), PF0014.1.3 (JASPAR 2024), PF0014.1.4 (JASPAR 2024), PF0014.1.5 (JASPAR 2024), PF0014.1.6 (JASPAR 2024), PF0014.1.7 (JASPAR 2024), PF0014.1.8 (JASPAR 2024), PF0014.1.9 (JASPAR 2024), MA0018.5.1 (JASPAR 2024), MA0018.5.10 (JASPAR 2024), MA0018.5.11 (JASPAR 2024), MA0018.5.12 (JASPAR 2024), MA0018.5.13 (JASPAR 2024), MA0018.5.14 (JASPAR 2024), MA0018.5.2 (JASPAR 2024), MA0018.5.3 (JASPAR 2024), MA0018.5.4 (JASPAR 2024), MA0018.5.6 (JASPAR 2024), MA0018.5.7 (JASPAR 2024), MA0018.5.9 (JASPAR 2024), MA2410.1.11 (JASPAR 2024), MA2410.1.12 (JASPAR 2024), MA2410.1.3 (JASPAR 2024), MA2410.1.4 (JASPAR 2024), MA2410.1.7 (JASPAR 2024), MA2410.1.8 (JASPAR 2024)
Organisms: Mus musculus, Saccharomyces cerevisiae, Homo sapiens, Rattus norvegicus
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: TGACGTCA
Type: Heterodimer
Binding TFs: P16220 (bZIP transcription factor, pKID domain, Basic region leucine zipper)
P16220 (bZIP transcription factor, pKID domain, Basic region leucine zipper)
UP00454A (bZIP transcription factor)
UP00308A (Homeobox domain, Homeobox KN domain)
UP00425A (bZIP transcription factor, Basic region leucine zipper)
UP00464A (bZIP transcription factor, Basic region leucine zipper, Aft1 osmotic stress response (OSM) domain)
UP00428A (bZIP transcription factor, Basic region leucine zipper)
UP00084A (SAND domain)
UP00185A (Homeobox domain, Homeobox KN domain)
UP00285A (bZIP transcription factor, Basic region leucine zipper)
UP00426A (bZIP transcription factor, bZIP Maf transcription factor, Jun-like transcription factor, Basic region leucine zipper)
UP00455A (bZIP transcription factor, Basic region leucine zipper)
UP00589E (Fork head domain)
UP00613A (Homeobox domain, Homeobox KN domain)
P16220
Binding Motifs: UP00185A_1 yyaymCATCAAwmwwmm
UP00084A_1 smkkkkRCGYmmgayrs
UP00285A_1 crwdrkrTGAsTCAymcwtmw
UP00308A_1 kwvywwATGTGTCAhwtwyh
UP00428A_1 wrdrTGAsTCAywa
UP00084A_2 kgrkcrACGTygtymw
UP00425A_1 / UP00426A_1 kkwATGAsKCATmy
UP00454A_1 whkktgmTTACGTAAkmycswk
UP00455A_1 / UP00455A_2 maghygaTGACGTCAyyrtccw
UP00455A_3 rTGACGTkyr
UP00464A_1 / UP00464A_2 mhhkmmgATGACGTAwkmrrtt
UP00464A_3 TGACGTCA
UP00589E_1 hrytmwctytwmgtaawawtdtr
UP00613A_1 wmaAwawkkTGACATGhmabgwk
UP00613A_2 rmmawawwkTGACATGymatsdg
PF0009.1 TGAYGTCA
PF0014.1 TGACGTCA
MA0018.5 TGATGTCA
MA2410.1 TGACGTCA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

Xiang C., Miao Z., Lam E. DNA-binding properties, genomic organization and expression pattern of TGA6, a new member of the TGA family of bZIP transcription factors in Arabidopsis thaliana.. Plant Mol. Biol. 34:403-415 (1997). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.