DNA Binding Motif

Accessions: UP00084A_1 (UniPROBE 20160601)
Names: 1110050A04Rik, AI256615, AI481278, glucocorticoid modulatory element binding protein 1, Glucocorticoid modulatory element-binding protein 1, GMEB-1, Gmeb1
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: smkkkkRCGYmmgayrs
Weblogo:
PSSM: P0 A C G T
01 0.17 0.26 0.35 0.22 s
02 0.34 0.31 0.15 0.20 m
03 0.11 0.23 0.35 0.31 k
04 0.13 0.22 0.29 0.36 k
05 0.13 0.07 0.40 0.40 k
06 0.05 0.04 0.33 0.59 k
07 0.71 0.01 0.28 0 R
08 0 0.99 0 0.01 C
09 0.01 0 0.99 0 G
10 0 0.28 0.01 0.71 Y
11 0.59 0.33 0.04 0.05 m
12 0.40 0.40 0.07 0.13 m
13 0.21 0.23 0.37 0.19 g
14 0.44 0.15 0.18 0.24 a
15 0.18 0.26 0.23 0.33 y
16 0.27 0.21 0.31 0.20 r
17 0.24 0.25 0.27 0.24 s
Binding TFs: UP00084A (SAND domain)
Binding Sites: TGACGTAA
TGACGTCA
ACGTAAAA
ACGTACGC
ACGTACGT
ATACGTAA
ATGACGTA
CGACGTAA
CGTACGTC
CTTACGTA
GACGTAAA
GTACGTAA
GTGACGTA
GTGCGTAA
GTTACGTA
TACGTAAA
TACGTACA
TGCGTCAA
TTACGCAA
TTACGTAA
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.