DNA Binding Motif

						

			
Accessions: UP00454A_1 (UniPROBE 20160601)

			
Names: Chromosome INstability, Cin5, HAL6
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: whkktgmTTACGTAAkmycswk
Weblogo: 
PSSM: P0      A      C      G      T
01   0.54   0.10   0.10   0.27      w
02   0.26   0.30   0.16   0.28      h
03   0.13   0.22   0.32   0.33      k
04   0.09   0.15   0.29   0.48      k
05   0.22   0.06   0.21   0.51      t
06   0.17   0.15   0.53   0.15      g
07   0.53   0.40   0.05   0.03      m
08   0.01      0   0.02   0.97      T
09   0.01   0.01   0.05   0.93      T
10   0.98   0.01   0.01   0.01      A
11   0.01   0.87   0.01   0.11      C
12   0.11   0.01   0.87   0.01      G
13   0.01   0.01   0.01   0.98      T
14   0.93   0.05   0.01   0.01      A
15   0.97   0.02      0   0.01      A
16   0.04   0.06   0.54   0.35      k
17   0.27   0.56   0.09   0.08      m
18   0.14   0.28   0.15   0.43      y
19   0.19   0.37   0.23   0.21      c
20   0.15   0.28   0.40   0.17      s
21   0.36   0.16   0.19   0.29      w
22   0.22   0.15   0.31   0.31      k
Binding TFs: UP00454A (bZIP transcription factor)
Binding Sites: TGACGTAA
TGACGTCA
CGTAATCA
ACGTAATA
ACGTAATC
ATTACGTA
CGTAAGCA
CTTACGTA
TGACATAA
TTACATAA
TTACCTAA
TTACGTAA
TTATATAA
ACATAAGC
ACATAATC
ACGTAAGC
ATGTAAGC
ATTACGTG
GATTACGA
TTAAGTAA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.