Transcription Factor
| Accessions: | UP00185A (UniPROBE 20160601) |
| Names: | D230003C07Rik, Homeobox protein PBX1, Pbx-1, Pbx1, pre B-cell leukemia transcription factor 1, Pre-B-cell leukemia transcription factor 1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P41778 |
| Description: | pre B-cell leukemia transcription factor 1 |
| Length: | 96 |
| Pfam Domains: | 17-76 Homeobox domain 35-73 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 STCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV 60 61 SQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTA |
| Interface Residues: | 17, 18, 19, 20, 21, 61, 62, 64, 65, 68, 69, 72, 73, 76 |
| 3D-footprint Homologues: | 3cmy_A, 6a8r_A, 3d1n_M, 1puf_A, 5zfz_A, 6fqp_B, 2lkx_A, 1zq3_P, 2ld5_A, 2h8r_B, 5hod_A, 4j19_B, 1b72_A, 1puf_B, 5zjt_E, 1au7_A, 3l1p_A, 5jlw_D, 1ic8_B, 1le8_A, 7q3o_C, 1ig7_A, 1le8_B, 6fqq_E, 1du0_A, 3rkq_B, 8g87_X, 1jgg_B, 4xrm_B, 2hdd_A, 1mnm_C, 6m3d_C, 1fjl_B, 4cyc_A, 2r5y_A, 2d5v_B, 1k61_B, 6es3_K, 4xrs_G, 7psx_B, 3a01_E, 2h1k_B, 5flv_I, 3lnq_A, 4qtr_D, 2hos_A |
| Binding Motifs: | UP00185A_1 yyaymCATCAAwmwwmm |
| Binding Sites: | TGACGTCA ACATCAAT ATCAATCA ATCATCAA ATGACGAG ATGATTGA ATTGATGG ATTTGATG CACATCAA CATATCAA CATCAATC CCCATCAA GATCATCA GCTCGTCA GTCAATCA GTCATCAA TCAATCAA TCATCAAA TCCATCAA TCCGTCAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.