Database '3D-footprint 20231221' (DNA Binding Motifs 1401-1450)

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AccessionsNamesConsensusOrganismsDescription and notes
1qn7_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtATATAArabidopsis thalianaCrystal structure of the T(-27) Adenovirus major late promoter TATA						
						


						
1qn8_BTRANSCRIPTION INITIATION FACTOR TFIID-1CTTTAATAArabidopsis thalianaCrystal structure of the T(-28) Adenovirus major late promoter TATA						
						


						
1qn9_BTRANSCRIPTION INITIATION FACTOR TFIID-1TACAAaAGArabidopsis thalianaCrystal structure of the C(-29) Adenovirus major late promoter TATA						
						


						
1qna_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtTTAAAArabidopsis thalianaCrystal structure of the T(-30) Adenovirus major late promoter TATA						
						


						
1qnb_BTRANSCRIPTION INITIATION FACTOR TFIID-1AtTTATAArabidopsis thalianaCrystal structure of the T(-25) Adenovirus major late promoter TATA						
						


						
1qnc_BTRANSCRIPTION INITIATION FACTOR TFIID-1sTkTTATTArabidopsis thalianaCrystal structure of the A(-31) Adenovirus major late promoter TATA						
						


						
1qne_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtTTATAArabidopsis thalianaCrystal structure of the Adenovirus major late promoter TATA box						
						


						
3u3w_ABTranscriptional activator PlcR proteintrTGAAnnnnTGCATaBacillus thuringiensisCrystal Structure of Bacillus thuringiensis PlcR in complex with the						
						


						
3u3w_BTranscriptional activator PlcR proteinTTCayaBacillus thuringiensisCrystal Structure of Bacillus thuringiensis PlcR in complex with the						
						


						
1h0m_ABTranscriptional activator protein TraRTGcnnnnnngCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Three-dimensional structure of the quorum sensing protein TraR bound to						
						


						
1h0m_BTranscriptional activator protein TraRgCAcAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Three-dimensional structure of the quorum sensing protein TraR bound to						
						


						
1h0m_CDTranscriptional activator protein TraRTGcdvvbntgCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Three-dimensional structure of the quorum sensing protein TraR bound to						
						


						
1l3l_ATranscriptional activator protein traRtkTGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Crystal structure of a bacterial quorum-sensing transcription factor complexed with						
						


						
1l3l_ACTranscriptional activator protein traRTtTGCAnnnnnGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Crystal structure of a bacterial quorum-sensing transcription factor complexed with						
						


						
1l3l_BDTranscriptional activator protein traRGTGCAnnnnTGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)		Crystal structure of a bacterial quorum-sensing transcription factor complexed with						
						


						
5nnx_ATranscriptional enhancer factor TEF-1gGAATkHomo sapiensTEAD1 bound to DNA
5gzb_ATranscriptional enhancer factor TEF-3ATTCCtCHomo sapiensCrystal Structure of Transcription Factor TEAD4 in Complex with M-CAT						
						


						
5no6_NTranscriptional enhancer factor TEF-3TnnnntATTCCHomo sapiensTEAD4-HOXB13 complex bound to DNA
5jub_ABTranscriptional regulatorTGACAnnnnTGTCTstrain ATCC BAA-491 / LMD-9
Streptococcus thermophilus		Crystal structure of ComR from S.thermophilus in complex with DNA						
						


						
5jub_BTranscriptional regulatorTGTCAstrain ATCC BAA-491 / LMD-9
Streptococcus thermophilus		Crystal structure of ComR from S.thermophilus in complex with DNA						
						


						
6w1a_ATranscriptional regulatorCcCaStreptococcus dysgalactiaeCrystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound						
						


						
6w1a_ABTranscriptional regulatorCcCasywdcACaStreptococcus dysgalactiaeCrystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound						
						


						
4fth_ATranscriptional regulator (NtrC family)TGCAAAAquifex aeolicus
strain VF5		Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
4fth_ABTranscriptional regulator (NtrC family)TTGCAnnnnTGCAAAAquifex aeolicus
strain VF5		Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
4iri_ATranscriptional regulator ERGCGGAagHomo sapiensAuto-inhibited ERG Ets Domain-DNA Complex
5ybd_ATranscriptional regulator ERGtTCCgHomo sapiensX-ray structure of ETS domain of Ergp55 in complex with						
						


						
4f6m_ATranscriptional regulator KaisotCCTGCCAHomo sapiensCrystal structure of Kaiso zinc finger DNA binding domain in						
						


						
4f6n_ATranscriptional regulator KaisogannnnGngHomo sapiensCrystal structure of Kaiso zinc finger DNA binding protein in						
						


						
5vmu_ATranscriptional regulator KaisotnnnnGgaHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
5vmw_ATranscriptional regulator KaisoTCCcGcGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
5vmx_ATranscriptional regulator KaisoGnnTCCCGCGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
5vmy_ATranscriptional regulator KaisoTCGCGGGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
6df5_ATranscriptional regulator KaisotGGCAGGaHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
6df8_ATranscriptional regulator KaisoTGGCAGGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
6dfa_ATranscriptional regulator KaisoTGGCAGGAHomo sapiensKaiso (ZBTB33) E535A zinc finger DNA binding domain in complex						
						


						
6dfb_ATranscriptional regulator KaisoTCCTGCCAHomo sapiensKaiso (ZBTB33) K539A zinc finger DNA binding domain in complex						
						


						
6dfc_ATranscriptional regulator KaisoTCcTGCCAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
6v8u_ATranscriptional regulator KaisoTGGCACGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with						
						


						
6ide_ABTranscriptional regulator LuxR familyGGGgnnnncCcCVibrio choleraeCrystal structure of the Vibrio cholera VqmA-Ligand-DNA complex provides molecular						
						


						
3q5f_ATranscriptional regulator slyAAGCTAAnnRTSalmonella enterica subsp. enterica serovar Typhimurium
strain LT2 / SGSC1412 / ATCC 700720		Crystal structure of the Salmonella transcriptional regulator SlyA in complex						
						


						
3q5f_ABTranscriptional regulator slyATAnntTAGCAAGCTAAnnATSalmonella enterica subsp. enterica serovar Typhimurium
strain LT2 / SGSC1412 / ATCC 700720		Crystal structure of the Salmonella transcriptional regulator SlyA in complex						
						


						
4aij_ABTRANSCRIPTIONAL REGULATOR SLYATTCAAnnnnTATAstrain YPIII
Yersinia pseudotuberculosis serotype O:3		Crystal structure of RovA from Yersinia in complex with a						
						


						
4aij_BTRANSCRIPTIONAL REGULATOR SLYATTCAstrain YPIII
Yersinia pseudotuberculosis serotype O:3		Crystal structure of RovA from Yersinia in complex with a						
						


						
4aik_ATRANSCRIPTIONAL REGULATOR SLYATTnTATGstrain YPIII
Yersinia pseudotuberculosis serotype O:3		Crystal structure of RovA from Yersinia in complex with an						
						


						
5i2d_RTranscriptional regulator, Crp familytCAcAstrain HB8 / ATCC 27634 / DSM 579
Thermus thermophilus		Crystal structure of T. thermophilus TTHB099 class II transcription activation						
						


						
6c2s_ADTranscriptional regulator, MarR familyATnnTTATAnnnTATAAnnATRhodopseudomonas palustris
strain ATCC BAA-98 / CGA009		Transcriptional repressor, CouR, bound to a 23-mer DNA duplex
6c2s_CTranscriptional regulator, MarR familyATnnTTATARhodopseudomonas palustris
strain ATCC BAA-98 / CGA009		Transcriptional repressor, CouR, bound to a 23-mer DNA duplex
5vxn_ABTranscriptional regulatory protein RcsBTAAGAnnnnTCCTAEscherichia coli
strain K12		Structure of two RcsB dimers bound to two parallel DNAs.
5vxn_CDTranscriptional regulatory protein RcsBTAGGAnnnnTCTTAEscherichia coli
strain K12		Structure of two RcsB dimers bound to two parallel DNAs.
5vxn_DTranscriptional regulatory protein RcsBtAaGAEscherichia coli
strain K12		Structure of two RcsB dimers bound to two parallel DNAs.
		

				

		


			

	
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