DNA Binding Motif

						

			
Accessions: 3q5f_AB (3D-footprint 20231221)

			
Names: Transcriptional regulator slyA
Organisms: Salmonella enterica subsp. enterica serovar Typhimurium, strain LT2 / SGSC1412 / ATCC 700720
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA
Length: 20
Consensus: TAnntTAGCAAGCTAAnnAT
Weblogo: 
PSSM: P0      A      C      G      T
01      2      2      3     89      T
02     71     10     13      2      A
03     24     24     24     24      n
04     24     24     24     24      n
05     10      8     13     65      t
06      3      2      2     89      T
07     96      0      0      0      A
08      3     13     78      2      G
09      0     96      0      0      C
10     96      0      0      0      A
11     93      2      0      1      A
12      0      0     96      0      G
13      2     90      2      2      C
14      0      0      0     96      T
15     96      0      0      0      A
16     90      2      2      2      A
17     24     24     24     24      n
18     24     24     24     24      n
19     89      2      3      2      A
20      3      2      2     89      T
Type: Heterodimer
Binding TFs: 3q5f_A (MarR family, MarR family, Winged helix DNA-binding domain)
3q5f_B (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 3q5f_C
3q5f_D
			
Publications: Dolan K.T, Duguid E.M, He C. Crystal structures of SlyA protein, a master virulence regulator of Salmonella, in free and DNA-bound states. The Journal of biological chemistry 286:22178-85 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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