DNA Binding Motif

						

			
Accessions: 1h0m_AB (3D-footprint 20231221)

			
Names: Transcriptional activator protein TraR
Organisms: Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium tumefaciens)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA
Length: 12
Consensus: TGcnnnnnngCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03     10     42     23     21      c
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     21     21     33     21      g
11      0     96      0      0      C
12     96      0      0      0      A
Type: Heterodimer
Binding TFs: 1h0m_A (Bacterial regulatory proteins, luxR family, Autoinducer binding domain)
1h0m_B (Bacterial regulatory proteins, luxR family, Autoinducer binding domain)
Binding Sites: 1h0m_E / 1h0m_F
			
Publications: Vannini A, Volpari C, Gargioli C, Muraglia E, Cortese R, De Francesco R, Neddermann P, Marco S.D. The crystal structure of the quorum sensing protein TraR bound to its autoinducer and target DNA. The EMBO journal 21:4393-401 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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