DNA Binding Motif

						

			
Accessions: 6c2s_AD (3D-footprint 20231221)

			
Names: Transcriptional regulator, MarR family
Organisms: Rhodopseudomonas palustris, strain ATCC BAA-98 / CGA009
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Transcriptional repressor, CouR, bound to a 23-mer DNA duplex
Length: 21
Consensus: ATnnTTATAnnnTATAAnnAT
Weblogo: 
PSSM: P0      A      C      G      T
01     88      2      2      4      A
02      2      2      1     91      T
03     24     24     24     24      n
04     24     24     24     24      n
05      7      6      9     74      T
06      2      4      2     88      T
07     88      2      4      2      A
08      0      0      0     96      T
09     88      4      2      2      A
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      2      2      2     90      T
14     96      0      0      0      A
15      2      9      2     83      T
16     88      2      4      2      A
17     88      4      2      2      A
18     24     24     24     24      n
19     24     24     24     24      n
20     93      0      3      0      A
21      2      4      2     88      T
Binding TFs: 6c2s_A / 6c2s_D (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 6c2s_U
6c2s_V
			
Publications: Cogan DP, Baraquet C, Harwood CS, Nair SK. Structural basis of transcriptional regulation by CouR, a repressor of coumarate catabolism, in Rhodopseudomonas palustris. J Biol Chem 293:11727-11735 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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