DNA Binding Motif
| Accessions: | 4fth_AB (3D-footprint 20231221) |
| Names: | Transcriptional regulator (NtrC family) |
| Organisms: | Aquifex aeolicus, strain VF5 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA |
| Length: | 15 |
| Consensus: | TTGCAnnnnTGCAAA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 5 5 5 81 T 02 0 0 0 96 T 03 0 0 96 0 G 04 0 96 0 0 C 05 67 11 7 11 A 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 5 7 5 79 T 11 0 0 96 0 G 12 0 96 0 0 C 13 84 0 5 7 A 14 96 0 0 0 A 15 67 11 5 13 A |
| Type: | Heterodimer |
| Binding TFs: | 4fth_A (Bacterial regulatory protein, Fis family) 4fth_B (Bacterial regulatory protein, Fis family) |
| Binding Sites: | 4fth_C 4fth_D |
| Publications: | Vidangos N.K, Heideker J, Lyubimov A, Lamers M, Huo Y, Pelton J.G, Ton J, Gralla J, Berger J, Wemmer D.E. DNA recognition by a σ(54) transcriptional activator from Aquifex aeolicus. Journal of molecular biology 426:3553-68 (2014). [Pubmed] |
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