DNA Binding Motif

						

			
Accessions: 4fth_A (3D-footprint 20231221)

			
Names: Transcriptional regulator (NtrC family)
Organisms: Aquifex aeolicus, strain VF5
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
Length: 6
Consensus: TGCAAA
Weblogo: 
PSSM: P0      A      C      G      T
01      8      8      8     72      T
02      0      0     96      0      G
03      0     96      0      0      C
04     72      8      8      8      A
05     80      8      8      0      A
06     72      8      8      8      A
Binding TFs: 4fth_A (Bacterial regulatory protein, Fis family)
Binding Sites: 4fth_C
4fth_D
			
Publications: Vidangos N.K, Heideker J, Lyubimov A, Lamers M, Huo Y, Pelton J.G, Ton J, Gralla J, Berger J, Wemmer D.E. DNA recognition by a σ(54) transcriptional activator from Aquifex aeolicus. Journal of molecular biology 426:3553-68 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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