DNA Binding Motif

						

			
Accessions: 3q5f_A (3D-footprint 20231221)

			
Names: Transcriptional regulator slyA
Organisms: Salmonella enterica subsp. enterica serovar Typhimurium, strain LT2 / SGSC1412 / ATCC 700720
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Salmonella transcriptional regulator SlyA in complex with DNA
Length: 10
Consensus: AGCTAAnnRT
Weblogo: 
PSSM: P0      A      C      G      T
01     78      6      6      6      A
02      0      0     96      0      G
03      6     78     12      0      C
04      0      0      0     96      T
05     96      0      0      0      A
06     84      6      6      0      A
07     24     24     24     24      n
08     24     24     24     24      n
09     66      0     24      6      R
10     12     12      6     66      T
Binding TFs: 3q5f_A (MarR family, MarR family, Winged helix DNA-binding domain)
Binding Sites: 3q5f_C
3q5f_D
			
Publications: Dolan K.T, Duguid E.M, He C. Crystal structures of SlyA protein, a master virulence regulator of Salmonella, in free and DNA-bound states. The Journal of biological chemistry 286:22178-85 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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