DNA Binding Motif
| Accessions: | 1h0m_B (3D-footprint 20231221) |
| Names: | Transcriptional activator protein TraR |
| Organisms: | Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium tumefaciens) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA |
| Length: | 4 |
| Consensus: | gCAc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 13 16 54 13 g 02 0 96 0 0 C 03 96 0 0 0 A 04 13 57 13 13 c |
| Binding TFs: | 1h0m_B (Bacterial regulatory proteins, luxR family, Autoinducer binding domain) |
| Binding Sites: | 1h0m_E / 1h0m_F |
| Publications: | Vannini A, Volpari C, Gargioli C, Muraglia E, Cortese R, De Francesco R, Neddermann P, Marco S.D. The crystal structure of the quorum sensing protein TraR bound to its autoinducer and target DNA. The EMBO journal 21:4393-401 (2002). [Pubmed] |
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