Transcription Factor

						

			
Accessions: 1h0m_B (3D-footprint 20231221)

			
Names: Transcriptional activator protein TraR, TRAR_RHIRD
Organisms: Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium tumefaciens)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P33905
Length: 230
Pfam Domains:    21-148 Autoinducer binding domain
  168-224 Bacterial regulatory proteins, luxR family
Sequence: 
(in bold interface residues)		   1 MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQST   60
  61 YFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKT  120
 121 ANGFMSMFTMASDKPVIDIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRW  180
 181 IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI
Interface Residues: 187, 198, 199, 200, 202, 203, 204, 206, 207
3D-footprint Homologues: 1l3l_A, 8dq1_C, 1pp7_U, 4wuh_B
Binding Motifs: 1h0m_AB TGcnnnnnngCA
1h0m_B gCAc
Binding Sites: 1h0m_E / 1h0m_F
			
Publications: Vannini A, Volpari C, Gargioli C, Muraglia E, Cortese R, De Francesco R, Neddermann P, Marco S.D. The crystal structure of the quorum sensing protein TraR bound to its autoinducer and target DNA. The EMBO journal 21:4393-401 (2002). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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