DNA Binding Motif

						

			
Accessions: 1qna_B (3D-footprint 20231221)

			
Names: TRANSCRIPTION INITIATION FACTOR TFIID-1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.
Length: 8
Consensus: cTtTTAAA
Weblogo: 
PSSM: P0      A      C      G      T
01     10     64     10     12      c
02      0      0      0     96      T
03     10     12     10     64      t
04      0      0      0     96      T
05      0      0      0     96      T
06     85      0      1     10      A
07     96      0      0      0      A
08     85      0     10      1      A
Binding TFs: 1qna_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1qna_E
1qna_F
			
Publications: Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.