Transcription Factor

						

			
Accessions: 1qn5_B (3D-footprint 20231221), 1qn7_B (3D-footprint 20231221), 1qn9_B (3D-footprint 20231221), 1qna_B (3D-footprint 20231221)

			
Names: AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit, TRANSCRIPTION INITIATION FACTOR TFIID-1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P28147
Length: 186
Pfam Domains:     12-94 Transcription factor TFIID (or TATA-binding protein, TBP)
   99-185 Transcription factor TFIID (or TATA-binding protein, TBP)
Sequence: 
(in bold interface residues)		   1 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTA   60
  61 LIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE  120
 121 GLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPV  180
 181 LSEFRK
Interface Residues: 16, 18, 46, 47, 61, 63, 69, 71, 105, 106, 108, 137, 138, 152, 154, 160, 162
3D-footprint Homologues: 7z7n_D, 1qna_B, 5n9g_G, 1ytb_A, 5oqj_O, 1ais_A, 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P
Binding Motifs: 1qn5_B cTCTTATA
1qn7_B cTtATATA
1qn9_B TACAAaAG
1qna_B cTtTTAAA
Binding Sites: 1qn5_E
1qn5_F
1qn7_E
1qn7_F
1qn9_E
1qn9_F
1qna_E
1qna_F
			
Publications: Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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