Transcription Factor
Accessions: | 1qn5_B (3D-footprint 20231221), 1qn7_B (3D-footprint 20231221), 1qn9_B (3D-footprint 20231221), 1qna_B (3D-footprint 20231221) |
Names: | AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit, TRANSCRIPTION INITIATION FACTOR TFIID-1 |
Organisms: | Arabidopsis thaliana |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Uniprot: | P28147 |
Length: | 186 |
Pfam Domains: | 12-94 Transcription factor TFIID (or TATA-binding protein, TBP) 99-185 Transcription factor TFIID (or TATA-binding protein, TBP) |
Sequence: (in bold interface residues) | 1 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTA 60 61 LIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE 120 121 GLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPV 180 181 LSEFRK |
Interface Residues: | 16, 18, 46, 47, 61, 63, 69, 71, 105, 106, 108, 137, 138, 152, 154, 160, 162 |
3D-footprint Homologues: | 1ytb_A, 5oqj_O, 1ais_A, 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B, 5n9g_G |
Binding Motifs: | 1qn5_B cTCTTATA 1qn7_B cTtATATA 1qn9_B TACAAaAG 1qna_B cTtTTAAA |
Binding Sites: | 1qn5_E 1qn5_F 1qn7_E 1qn7_F 1qn9_E 1qn9_F 1qna_E 1qna_F |
Publications: | Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.