Transcription Factor

Accessions: 1qn5_B (3D-footprint 20231221), 1qn7_B (3D-footprint 20231221), 1qn9_B (3D-footprint 20231221), 1qna_B (3D-footprint 20231221)
Names: AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit, TRANSCRIPTION INITIATION FACTOR TFIID-1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P28147
Length: 186
Pfam Domains: 12-94 Transcription factor TFIID (or TATA-binding protein, TBP)
99-185 Transcription factor TFIID (or TATA-binding protein, TBP)
Sequence:
(in bold interface residues)
1 VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTA 60
61 LIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLE 120
121 GLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPV 180
181 LSEFRK
Interface Residues: 16, 18, 46, 47, 61, 63, 69, 71, 105, 106, 108, 137, 138, 152, 154, 160, 162
3D-footprint Homologues: 1ytb_A, 5oqj_O, 1ais_A, 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B, 5n9g_G
Binding Motifs: 1qn5_B cTCTTATA
1qn7_B cTtATATA
1qn9_B TACAAaAG
1qna_B cTtTTAAA
Binding Sites: 1qn5_E
1qn5_F
1qn7_E
1qn7_F
1qn9_E
1qn9_F
1qna_E
1qna_F
Publications: Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.