DNA Binding Motif

						

			
Accessions: 1qn9_B (3D-footprint 20231221)

			
Names: TRANSCRIPTION INITIATION FACTOR TFIID-1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.
Length: 8
Consensus: TACAAaAG
Weblogo: 
PSSM: P0      A      C      G      T
01     11      8      8     69      T
02     96      0      0      0      A
03      0     96      0      0      C
04     96      0      0      0      A
05     96      0      0      0      A
06     63     17      8      8      a
07     96      0      0      0      A
08     11      8     69      8      G
Binding TFs: 1qn9_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1qn9_E
1qn9_F
			
Publications: Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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