DNA Binding Motif

						

			
Accessions: 5vxn_AB (3D-footprint 20231221)

			
Names: Transcriptional regulatory protein RcsB
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of two RcsB dimers bound to two parallel DNAs.
Length: 14
Consensus: TAAGAnnnnTCCTA
Weblogo: 
PSSM: P0      A      C      G      T
01      6      6      6     78      T
02     96      0      0      0      A
03     78      6      6      6      A
04      6      6     78      6      G
05     96      0      0      0      A
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      0      0      0     96      T
11      0     96      0      0      C
12      0     96      0      0      C
13      6      6      6     78      T
14     78      6      6      6      A
Type: Heterodimer
Binding TFs: 5vxn_A (Response regulator receiver domain, Bacterial regulatory proteins, luxR family, Sigma-70, region 4)
5vxn_B (Response regulator receiver domain, Bacterial regulatory proteins, luxR family)
Binding Sites: 5vxn_E
5vxn_F
			
Publications: Filippova EV, Zemaitaitis B, Aung T, Wolfe AJ, Anderson WF. Structural Basis for DNA Recognition by the Two-Component Response Regulator RcsB. MBio : (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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