DNA Binding Motif

						

			
Accessions: 3u3w_AB (3D-footprint 20231221)

			
Names: Transcriptional activator PlcR protein
Organisms: Bacillus thuringiensis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of Bacillus thuringiensis PlcR in complex with the peptide PapR7 and DNA
Length: 16
Consensus: trTGAAnnnnTGCATa
Weblogo: 
PSSM: P0      A      C      G      T
01     16      8      8     64      t
02     56      8     24      8      r
03      0      0      0     96      T
04      0      0     96      0      G
05     96      0      0      0      A
06     96      0      0      0      A
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0      0      0     96      T
12      0      0     96      0      G
13      0     96      0      0      C
14     96      0      0      0      A
15      0      0      0     96      T
16     64     16      8      8      a
Binding TFs: 3u3w_A / 3u3w_B (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 3u3w_Y
3u3w_Z
			
Publications: Grenha R, Slamti L, Nicaise M, Refes Y, Lereclus D, Nessler S. Structural basis for the activation mechanism of the PlcR virulence regulator by the quorum-sensing signal peptide PapR. Proceedings of the National Academy of Sciences of the United States of America 110:1047-52 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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