DNA Binding Motif
| Accessions: | 1l3l_BD (3D-footprint 20231221) |
| Names: | Transcriptional activator protein traR |
| Organisms: | Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium tumefaciens) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA |
| Length: | 13 |
| Consensus: | GTGCAnnnnTGCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 11 9 67 9 G 02 0 0 0 96 T 03 0 0 96 0 G 04 0 96 0 0 C 05 67 9 11 9 A 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 9 9 11 67 T 11 0 0 96 0 G 12 0 96 0 0 C 13 96 0 0 0 A |
| Type: | Heterodimer |
| Binding TFs: | 1l3l_B (Bacterial regulatory proteins, luxR family, Autoinducer binding domain) 1l3l_D (Bacterial regulatory proteins, luxR family, Autoinducer binding domain) |
| Binding Sites: | 1l3l_E / 1l3l_G |
| Publications: | Zhang R.G, Pappas K.M, Pappas T, Brace J.L, Miller P.C, Oulmassov T, Molyneaux J.M, Anderson J.C, Bashkin J.K, Winans S.C, Joachimiak A. Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA. Nature 417:971-4 (2002). [Pubmed] |
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