DNA Binding Site
| Accessions: | AACACCTG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AACACCTG |
| Type: | Heterodimer |
| Binding TFs: | UP00036A (Helix-loop-helix DNA-binding domain, Myogenic Basic domain) UP00046A (Helix-loop-helix DNA-binding domain) UP00358A (Helix-loop-helix DNA-binding domain) UP00361A (Helix-loop-helix DNA-binding domain) UP00369A (Helix-loop-helix DNA-binding domain) UP00378A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) UP00548A (Helix-loop-helix DNA-binding domain) UP00548D (Helix-loop-helix DNA-binding domain) UP00621B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Motifs: | UP00036A_1 rrrgrACAGbTGtyyg UP00046A_1 atcmvCAGGTGcraamw UP00358A_1 wAyyAwATwTrgmm UP00361A_1 agwaaaawrwhdwr UP00369A_1 mawwaawaAaadgw UP00378A_1 ctwwramwwwmmaw UP00036A_2 vsmrmCAgmCgcrcc UP00046A_2 arrgcCAGATGkyyssg UP00358A_2 / UP00384A_3 yvsamCACCTGTTmcrg UP00361A_2 / UP00384A_5 rrmsCAsCTGbGccmt UP00369A_2 / UP00384A_8 arwwyCACCTGYthawy UP00378A_2 / UP00384A_6 kktrmCAksTGkymmh UP00379A_2 / UP00384A_7 mrtrmCACCTGCtaayy UP00548A_1 sGgamrGrCACGTGtCsyhCysy UP00548D_1 mrkrkrkRACAGcTGTymgrkmm UP00621B_1 wwwmrakrCACCTGyTakwhaw |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.